The Catastrophe of Antibiotic Resistance

March 6, 2015

By Medical Discovery News

The Catastrophe of Antibiotic Resistance

The World Health Organization has categorized antibiotic resistance as “a major global threat” and multidisciplinary research teams estimate it could lead to 10 million deaths each year by 2050. Bacteria that cause disease in humans can become resistant to the drugs used to treat them, and this poses a growing problem to public health.

Antibiotics were first introduced in the 1940s with the discovery and development of penicillin and saved many people from otherwise life-threatening infections. This one class of drugs has had an incredible impact on decreasing the severity of infections and saving lives.

Lately antibiotics have become overused and misused, which has allowed bacteria to mutate in ways that render antibiotics relatively powerless. Bacteria were one of the earliest life forms on Earth and remain one of the most successful, present everywhere from Arctic glaciers to geothermal springs. Because they are masters of adaptation, exposure to antibiotics causes the bacteria to accumulate mutations that will allow them to ignore the action of the antibiotics. That’s why doctors should only prescribe an antibiotic in the likelihood of a bacterial infection, and why it’s important to take all of the prescribed doses of an antibiotic. Otherwise, you can give the bacteria enough contact with the antibiotic to mutate but not enough to kill them, and they can come back stronger.

Half the use of antibiotics does not come from a doctor’s office or hospital, but a farm. Chickens, pigs, cows, and other livestock raised for food production are fed antibiotics to prevent infections and for faster weight gain. Many countries now ban this practice, and in 2013 the U.S. Food and Drug Administration (FDA) asked pharmaceutical companies to voluntarily curtail the sale of antibiotics directly to famers. Today, 26 pharmaceutical companies will only issue antibiotics for animals with a veterinarian’s prescription.

Infections by drug-resistant bacteria can be twice as likely to result in hospitalization and death. And while some bacteria are resistant to a single antibiotic, others are resistant to many. Methicillin-resistant Staphylococcus aureus (MRSA), multi-drug-resistant Neisseria gonorrhea, and multi-drug-resistant Clostridium difficile are superbugs taking a devastating toll worldwide. Some bacteria have mutated against all forms of antibiotics normally used to treat them, leaving no effective treatment options. Such infections are occurring around the globe in both rich and developing countries.

Legislation in the U.S. Congress proposes to permanently ban antibiotics that are used in humans from being used in livestock as well.  However, some argue that there is not a clear link between the antibiotic-resistant bacterial strains generated in livestock practices and those seen in human disease, which requires more intense research to answer. Whatever the outcome, the emergence and spread of antibiotic-resistant bacteria must be stopped. We also desperately need to develop new antimicrobials human use.

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Putting Your Bacteria to Work

April 4, 2014

By Medical Discovery News

A biotech startup company called uBiome has adopted the concept of crowd sourcing, using the Internet to rally people around a cause, for research on the human microbiome. The microbiome is all the microscopic flora and fauna that live in and on the human body. Humans have 10 times as many bacterial cells as human cells. But science is just beginning to understand the populations of the microbiome and how they affect a person’s health for good or bad.

What science already knows about the microbiome comes from the $173 million government-funded Human Microbiome Project (HMP). This project took five years and collected and sequenced the microbiome of 250 healthy people. It proved there are at least 1,000 different types of bacteria present on every person. The National Institutes of Health (NIH) has made the four terabytes of data from this project available to all researchers via the Microbiome Cloud Project.

Different anatomical sites of the body have different microbial populations. Additionally, the microbial populations that inhabit our bodies vary from person to person, but are very stable within an individual. Each person has their own distinct microbial signature that is unique to them. Most of these microbial species are actually helpful and protect against invading microbes that can cause disease. Some, like certain E. coli in the gut, actually produce essential vitamins that keep us healthy. Alterations in the human microbiome have been associated with diseases like autism, obesity, irritable bowel syndrome, and asthma. In some cases, correcting microbial populations associated with disease states may cure or help manage the disease.

A startup company called uMicrobiome is looking to sequence the microbiomes of at least 1,000 more people from all over the world, and they are trying to find volunteers using crowd sourcing. Anyone interested can go to the company’s Web site (ubiome.com), make a pledge, and request a sampling kit, which contains a swab for gently brushing areas of the ears, mouth, genitalia, or gastrointestinal tract. The swabs are placed into a solution that preserves and stabilizes the bacteria for transport back to the lab.

uMicrobiome examines samples for their 16S RNA sequences. These sequences are present in all microbes, but part of the sequence is unique to each different bacterium. This technology of DNA sequencing can determine the different types of bacteria present and their proportions in each sample.

The company puts the results on their Web site for individuals to access and analyze their microbiome. There are also software tools to help users interpret what they are seeing. uMicrobiome secures the data so that it cannot released in an identifiable form. A person can choose to share their data with other citizen scientists for scientific studies or compare their microbiome to others’.

So science to the citizens has arrived! Anyone can learn about their own microbial world and advance this field of science as well. 

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